Numpy, Scipy and Theano on Eddie

Numpy

site.cfg 

[mkl]
library_dirs = /local/scratch/ls418/intel/composerxe-2011.0.084/mkl/lib/intel64
include_dirs = /local/scratch/ls418/intel/composerxe-2011.0.084/mkl/include/
mkl_libs = mkl_def, mkl_intel_lp64, mkl_intel_thread, mkl_core, mkl_mc
lapack_libs = mkl_lapack95_lp64

numpy/distutils/intelccompiler.py

cc_exe = 'icc -fPIC -O3 -openmp' 

python setup.py config --compiler=intel build_clib --compiler=intel build_ext --compiler=intel install --home=$INSTALL_DIR

Scipy

numpy/distutils/fcompiler/intel.py

pic_flags = ['-kPIC']

numpy/distutils/fcompiler/__init__.py (line 432 or so)

return '12.0'

Use the same site.cfg as for numpy and install

python setup.py config --compiler=intel --fcompiler=intel build_clib --compiler=intel --fcompiler=intel build_ext --compiler=intel --fcompiler=intel install --home=$INSTALL_DIR 

Theano

pip install Theano